usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 16.0495263157895 -14.7588421052632 22.4738684210526 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1023 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 568 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 568 Number of spheres polar: 210, nonpolar: 219, out of current total: 568 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.05722 26.04018 -24.50774 -4.87033 12.47523 32.37479 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 324 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 287 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 249 Spheres center of coords (x y z): 16.2467196385542 -15.6454918875502 22.0959895582329 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.64340851199074 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 38