usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 17.289064516129 -14.033064516129 23.1914838709677 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1278 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 721 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 718 Number of spheres polar: 218, nonpolar: 323, out of current total: 718 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.47658 27.28673 -23.98493 -4.10266 13.19207 33.12842 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 398 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 337 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 307 Spheres center of coords (x y z): 17.534703257329 -16.0755390879479 22.702125504886 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.02618739212297 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 31