usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 16.2607391304348 -12.0074347826087 22.2322173913043 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1313 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 906 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 906 Number of spheres polar: 348, nonpolar: 337, out of current total: 906 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.30915 26.13327 -21.83673 -3.07261 12.32509 32.10724 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 297 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 239 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 210 Spheres center of coords (x y z): 17.1768421428571 -15.0177961428571 21.7061577142857 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.10019636918757 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 23