usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 16.2607391304348 -12.0074347826087 22.2322173913043 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1313 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 906 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 906 Number of spheres polar: 348, nonpolar: 337, out of current total: 906 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.30915 26.13327 -21.83673 -3.07261 12.32509 32.10724 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 469 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 411 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 381 Spheres center of coords (x y z): 16.7788583464567 -14.9815079790026 21.792623648294 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.20404876397506 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 23