usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 16.7581785714286 -12.7676071428571 22.3988928571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1173 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 804 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 804 Number of spheres polar: 272, nonpolar: 330, out of current total: 804 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.77995 26.64314 -22.73419 -2.95824 12.43324 32.30360 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 419 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 352 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 288 Spheres center of coords (x y z): 16.9365521180556 -14.4694794444444 20.7824526388889 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.00644778933479 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 28