usefragsph not on There are 45 ligand heavy atoms Ligand center of coords (x y z): 16.3905333333333 -14.5902666666667 23.3652444444444 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1162 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 733 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 725 Number of spheres polar: 193, nonpolar: 322, out of current total: 725 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.50930 26.10912 -24.51086 -4.67353 13.39150 33.27420 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 424 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 377 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 355 Spheres center of coords (x y z): 16.9122047042254 -15.3563483098592 22.4213581971831 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.4403296744913 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 45