usefragsph not on There are 9 ligand heavy atoms Ligand center of coords (x y z): 19.3018888888889 -16.2647777777778 25.6668888888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 727 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 525 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 509 Number of spheres polar: 214, nonpolar: 152, out of current total: 509 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.39217 29.28805 -26.03008 -6.28916 15.76850 35.57714 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 292 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 247 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 210 Spheres center of coords (x y z): 19.2545812857143 -18.4145166666667 26.1415047619048 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.897542408859 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 22 Final number of spheres that are from crystallographic ligand: 9