usefragsph not on There are 6 ligand heavy atoms Ligand center of coords (x y z): 25.6221666666667 -2.76766666666667 1.375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 578 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 460 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 450 Number of spheres polar: 162, nonpolar: 163, out of current total: 450 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 15.76013 35.58225 -12.65190 7.12570 -8.28321 11.19272 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 192 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 160 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 129 Spheres center of coords (x y z): 24.7326299224806 -3.95780736434108 1.78053410852713 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.77425296400685 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 6