usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 17.1932424242424 -12.3972424242424 21.7308484848485 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1462 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 848 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 846 Number of spheres polar: 197, nonpolar: 404, out of current total: 846 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.26139 27.11802 -22.23297 -3.66865 11.76780 31.51171 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 463 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 409 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 394 Spheres center of coords (x y z): 17.1625797969543 -14.8760036548223 21.1349687563452 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.31057236450179 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 33