DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-5-21.c.bkslab.org 21-Feb-12 14:59:53 Solvation type: no ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dbgen_dec_0037.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1761408 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -5.522000 -25.05900 0.7170000 grid max 40.01800 7.281000 42.62700 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 40 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 13.77493 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C23079718 5076 7822088 38 706 5737.0 5.43 E C23079718 2 -6.14 -34.48 0.00 0.00 -40.62 2 C23079718 2921 1643340 38 5550 128.0 1.00 E C23079718 3 -5.77 -38.58 0.00 0.00 -44.36 3 C23079718 3390 2557844 38 761 1108.6 1.56 E C23079718 2 -9.03 -28.59 0.00 0.00 -37.61 4 C23079718 5144 7881797 38 705 4912.0 5.45 E C23079718 2 -7.35 -29.38 0.00 0.00 -36.73 5 C63839261 1458 1764285 26 600 1219.9 0.81 E C63839261 2 -3.32 -37.59 0.00 0.00 -40.91 6 C12484620 1883 1449555 25 25095 325.4 0.64 E C12484620 4 -9.67 -28.37 0.00 0.00 -38.04 7 C12484620 1368 1474352 25 499 1807.5 1.04 E C12484620 2 -8.83 -30.12 0.00 0.00 -38.95 8 C12861200 4280 2110892 34 860 1592.3 1.08 E C12861200 3 -18.42 -32.49 0.00 0.00 -50.91 9 C12861200 1964 338844 34 399 172.1 0.18 E C12861200 3 -5.90 -38.39 0.00 0.00 -44.29 10 C12861200 2179 722546 34 258 296.3 0.43 E C12861200 3 -9.83 -32.73 0.00 0.00 -42.56 11 C24023107 3652 1842871 34 404 649.1 1.31 E C24023107 3 -11.68 -27.66 0.00 0.00 -39.34 12 C24023107 2921 1191098 34 440 367.1 0.75 E C24023107 3 -6.59 -26.39 0.00 0.00 -32.97 13 C65136366 1427 2189385 25 600 1679.2 1.12 E C65136366 2 -11.85 -22.26 0.00 0.00 -34.11 14 C14667327 1489 1013282 32 7110 360.2 0.51 E C14667327 3 -5.92 -33.61 0.00 0.00 -39.53 15 C14667327 3881 6264845 32 479 3642.6 3.24 E C14667327 2 -8.91 -31.62 0.00 0.00 -40.53 EOF: ../database_link/dbgen_dec_0037.db.gz end of file encountered total minimization steps = 1761360 for debugging, time = 26.55000 solvation corrected scores: (a) 1 C12861200 score: -50.908 nathvy = 34 nconfs = 860 2 C23079718 score: -44.356 nathvy = 38 nconfs = 5550 3 C12861200 score: -44.293 nathvy = 34 nconfs = 399 4 C12861200 score: -42.562 nathvy = 34 nconfs = 258 5 C63839261 score: -40.906 nathvy = 26 nconfs = 600 6 C23079718 score: -40.622 nathvy = 38 nconfs = 706 7 C14667327 score: -40.534 nathvy = 32 nconfs = 479 8 C14667327 score: -39.529 nathvy = 32 nconfs = 7110 9 C24023107 score: -39.339 nathvy = 34 nconfs = 404 10 C12484620 score: -38.948 nathvy = 25 nconfs = 499 11 C12484620 score: -38.040 nathvy = 25 nconfs = 25095 12 C23079718 score: -37.614 nathvy = 38 nconfs = 761 13 C23079718 score: -36.733 nathvy = 38 nconfs = 705 14 C65136366 score: -34.112 nathvy = 25 nconfs = 600 15 C24023107 score: -32.974 nathvy = 34 nconfs = 440 Date and Time: 21-Feb-12 15:00:54 elapsed time (sec): 26.5700