DOCK version 3.5.54, compiled on 20110906 CPU, Date, and Time: node-6-14.c.bkslab.org 25-Jan-12 17:15:43 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dbgen_dec_0037.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1676160 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -5.459000 -24.38100 0.8530006 grid max 38.54100 7.119000 42.35300 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 41 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 14.27533 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C23079718 5578 7919574 38 706 187.7 11.80 E C23079718 2 -16.84 -30.36 5.20 -3.30 -45.30 2 C23079718 2788 1479770 38 5550 89.3 1.74 E C23079718 3 -11.84 -34.25 5.70 -3.33 -43.71 3 C23079718 3692 2861824 38 761 822.0 3.61 E C23079718 2 -8.52 -33.70 5.53 -3.05 -39.74 4 C23079718 5672 7987493 38 705 2204.2 11.90 E C23079718 2 -15.91 -30.69 5.11 -3.32 -44.81 5 C63839261 1536 1861851 26 600 1334.8 1.79 E C63839261 2 -13.46 -33.17 8.42 -1.99 -40.20 6 C12484620 2023 1428987 25 25095 147.0 1.27 E C12484620 4 -11.18 -28.51 6.18 -1.43 -34.94 7 C12484620 1526 1574845 25 499 1413.4 2.49 E C12484620 2 -10.31 -31.19 5.96 -1.45 -36.98 8 C12861200 4735 2350036 34 860 1787.3 2.53 E C12861200 3 -19.20 -34.22 16.63 -2.66 -39.45 9 C12861200 2050 332009 34 399 117.3 0.36 E C12861200 3 -7.54 -39.99 13.41 -3.32 -37.45 10 C12861200 2447 832019 34 258 405.7 1.07 E C12861200 3 -20.47 -24.11 15.73 -1.61 -30.47 11 C24023107 4361 2052473 34 404 1384.7 3.06 E C24023107 3 -7.37 -27.08 4.86 -2.97 -32.55 12 C24023107 2788 972705 34 440 94.0 1.26 E C24023107 3 -13.74 -31.52 4.74 -2.18 -42.70 13 C65136366 1517 2354590 25 600 1874.0 2.63 E C65136366 2 -14.42 -22.08 6.04 0.37 -30.08 14 C14667327 1219 677428 32 7110 195.4 0.67 E C14667327 3 -2.73 -34.14 7.89 -4.00 -32.98 15 C14667327 4327 6418328 32 479 4220.0 6.88 E C14667327 2 -9.45 -32.12 8.64 -3.53 -36.46 EOF: ../database_link/dbgen_dec_0037.db.gz end of file encountered total minimization steps = 1822401 for debugging, time = 54.29000 solvation corrected scores: (a) 1 C23079718 score: -45.302 nathvy = 38 nconfs = 706 2 C23079718 score: -44.805 nathvy = 38 nconfs = 705 3 C23079718 score: -43.707 nathvy = 38 nconfs = 5550 4 C24023107 score: -42.701 nathvy = 34 nconfs = 440 5 C63839261 score: -40.204 nathvy = 26 nconfs = 600 6 C23079718 score: -39.740 nathvy = 38 nconfs = 761 7 C12861200 score: -39.451 nathvy = 34 nconfs = 860 8 C12861200 score: -37.449 nathvy = 34 nconfs = 399 9 C12484620 score: -36.985 nathvy = 25 nconfs = 499 10 C14667327 score: -36.456 nathvy = 32 nconfs = 479 11 C12484620 score: -34.938 nathvy = 25 nconfs = 25095 12 C14667327 score: -32.981 nathvy = 32 nconfs = 7110 13 C24023107 score: -32.552 nathvy = 34 nconfs = 404 14 C12861200 score: -30.468 nathvy = 34 nconfs = 258 15 C65136366 score: -30.080 nathvy = 25 nconfs = 600 Date and Time: 25-Jan-12 17:16:40 elapsed time (sec): 54.3100