usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): -35.5723428571429 -29.7524 44.1705428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 998 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 516 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 509 Number of spheres polar: 153, nonpolar: 181, out of current total: 509 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -45.46572 -25.60178 -39.73447 -19.78916 34.23134 54.16255 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 332 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 293 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 276 Spheres center of coords (x y z): -33.8616578985507 -32.445837173913 44.2295285869565 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.00510998285108 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 35