usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): -1.4385 30.99275 135.932655625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 470 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 324 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 324 Number of spheres polar: 51, nonpolar: 218, out of current total: 324 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.15235 8.56087 25.12829 40.96920 126.18338 140.26166 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 144 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 126 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 113 Spheres center of coords (x y z): -1.24014876106195 31.3535631858407 133.951357699115 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.48364495894386 Final number of output spheres is: 45 Number of polar spheres: 0 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 32