DOCK version 3.5.54, compiled on 20110906 CPU, Date, and Time: node-5-33.c.bkslab.org 26-Jan-12 12:57:36 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dbgen_dec_0037.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1761408 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -5.046001 -25.04800 0.8250008 grid max 39.95400 6.952000 42.32500 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 40 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 13.77493 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C23079718 5076 7753190 38 706 5738.6 8.26 E C23079718 2 -5.47 -34.82 5.57 -4.89 -39.61 2 C23079718 2921 1620128 38 5550 128.1 1.42 E C23079718 3 -5.79 -37.88 6.23 -4.36 -41.80 3 C23079718 3390 2571513 38 761 703.9 2.29 E C23079718 2 -8.94 -29.20 5.20 -2.50 -35.43 4 C23079718 5144 7756220 38 705 2746.4 8.40 E C23079718 2 -4.14 -31.37 5.06 -4.50 -34.96 5 C63839261 1458 1755569 26 600 1224.6 1.21 E C63839261 2 -3.62 -37.12 8.15 -1.65 -34.23 6 C12484620 1883 1436296 25 25095 134.8 0.90 E C12484620 4 -11.87 -25.42 6.66 -2.35 -32.98 7 C12484620 1368 1439825 25 499 1038.1 1.59 E C12484620 2 -7.19 -30.54 5.81 -1.31 -33.23 8 C12861200 4280 2196402 34 860 1558.0 1.68 E C12861200 3 -19.45 -30.36 18.72 -1.43 -32.52 9 C12861200 1964 329308 34 399 79.7 0.27 E C12861200 3 -0.12 -39.71 13.92 -3.31 -29.23 10 C12861200 2179 758261 34 258 143.9 0.69 E C12861200 3 0.91 -29.73 5.67 -3.36 -26.51 11 C24023107 3652 1837279 34 404 677.7 1.96 E C24023107 3 -9.90 -30.11 5.51 -2.65 -37.15 12 C24023107 2921 1169057 34 440 132.1 1.09 E C24023107 3 -6.86 -26.57 4.14 -2.77 -32.05 13 C65136366 1427 2151880 25 600 1678.6 1.68 E C65136366 2 -11.41 -22.43 6.43 0.82 -26.59 14 C14667327 1489 1016675 32 7110 260.8 0.73 E C14667327 3 -4.04 -33.98 6.13 -4.28 -36.17 15 C14667327 3881 6130030 32 479 3523.9 4.68 E C14667327 2 -9.20 -32.17 9.68 -3.86 -35.55 EOF: ../database_link/dbgen_dec_0037.db.gz end of file encountered total minimization steps = 1748915 for debugging, time = 37.91000 solvation corrected scores: (a) 1 C23079718 score: -41.797 nathvy = 38 nconfs = 5550 2 C23079718 score: -39.612 nathvy = 38 nconfs = 706 3 C24023107 score: -37.153 nathvy = 34 nconfs = 404 4 C14667327 score: -36.175 nathvy = 32 nconfs = 7110 5 C14667327 score: -35.546 nathvy = 32 nconfs = 479 6 C23079718 score: -35.429 nathvy = 38 nconfs = 761 7 C23079718 score: -34.958 nathvy = 38 nconfs = 705 8 C63839261 score: -34.231 nathvy = 26 nconfs = 600 9 C12484620 score: -33.233 nathvy = 25 nconfs = 499 10 C12484620 score: -32.982 nathvy = 25 nconfs = 25095 11 C12861200 score: -32.519 nathvy = 34 nconfs = 860 12 C24023107 score: -32.053 nathvy = 34 nconfs = 440 13 C12861200 score: -29.227 nathvy = 34 nconfs = 399 14 C65136366 score: -26.594 nathvy = 25 nconfs = 600 15 C12861200 score: -26.510 nathvy = 34 nconfs = 258 Date and Time: 26-Jan-12 12:58:17 elapsed time (sec): 37.9300