usefragsph not on There are 9 ligand heavy atoms Ligand center of coords (x y z): 17.0444444444444 17.1172222222222 5.73477777777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 844 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 510 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 506 Number of spheres polar: 269, nonpolar: 145, out of current total: 506 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.04973 26.93584 7.15907 27.06941 -2.80238 15.59476 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 170 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 129 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 20 Final number of output spheres is: 20 Number of polar spheres: 15 Number of nonpolar spheres: 3 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 9