usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 31.1468846153846 12.0012307692308 17.6663461538462 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 814 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 494 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 492 Number of spheres polar: 236, nonpolar: 129, out of current total: 492 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.18340 40.99735 3.51594 21.82557 7.77605 27.64929 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 183 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 150 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 115 Spheres center of coords (x y z): 31.6431683478261 10.4979259130435 19.1992732173913 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.48580112203824 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 26