usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 0.26975 17.28175 19.04215 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 906 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 580 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 576 Number of spheres polar: 282, nonpolar: 177, out of current total: 576 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.70517 10.11302 7.33839 26.93643 9.11620 29.04138 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 191 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 152 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 114 Spheres center of coords (x y z): 1.42704412280702 19.1217260526316 21.3100899122807 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.15177719008066 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 20