usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 45.3538888888889 19.529 52.5758888888889
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 548
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 347
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 345
Number of spheres polar: 114, nonpolar: 146, out of current total: 345
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 36.35619 55.26285 10.14075 28.73681 42.63547 62.42640
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 140
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 114
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 97
Spheres center of coords (x y z): 47.369826185567 24.1069602061856 51.3791688659794
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.42914982133491
Final number of output spheres is: 45
Number of polar spheres: 23
Number of nonpolar spheres: 16
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 9