usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 43.7443636363636 23.0767272727273 52.0492727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 750 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 497 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 486 Number of spheres polar: 153, nonpolar: 180, out of current total: 486 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.75847 53.68793 13.18838 32.83600 42.18652 61.93821 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 293 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 256 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 199 Spheres center of coords (x y z): 46.000761758794 25.2704222110553 49.9836730150754 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.56787645562417 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 20 Final number of spheres that are from crystallographic ligand: 22