usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 44.3403846153846 23.7151923076923 49.3798461538462 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 670 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 449 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 444 Number of spheres polar: 128, nonpolar: 207, out of current total: 444 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.47608 54.26292 14.12428 31.04287 39.38209 59.36236 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 271 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 231 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 213 Spheres center of coords (x y z): 47.1564653521127 24.5769807981221 48.976159201878 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.71935138735517 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 26