usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 44.4313076923077 23.7579230769231 49.3251923076923 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 789 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 512 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 510 Number of spheres polar: 124, nonpolar: 229, out of current total: 510 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.48348 54.31310 16.54030 31.71990 39.53288 59.20916 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 197 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 168 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 155 Spheres center of coords (x y z): 46.6337673548387 25.5721461290323 48.3625267741936 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.32976659359092 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 26