name of input pdb file: rec.crg name of output contact grid file: solvmap_sev atomic radii (A): 1. for O N C S P Other [1.4 1.3 1.7 2.22.2 1.8]? 1.600000 1.650000 1.900000 1.900000 1.900000 1.600000 2. for water probe (exclusion) [1.4]? 1.400000 number of grid points/angstrom?(1-4) 2 pdb file of limiting box: box assumed ligand atomic radius (A): 1.400000 maximum receptor atomic radius (A): 1.900000 grid resolution (A): 0.5000000 integration cutoff (A): 10.00000 receptor minimum and maximum x y z (A): 17.34200 -1.751000 21.76900 61.13500 32.01400 70.12500 box minimum and maximum x y z (A): 26.74000 1.156000 26.84700 62.45100 37.62000 70.73900 dielectric grid expansion size (points/edge) 20 12 17 4 0 5 dielectric grid minimum and maximum x y z (A): 16.74000 -4.844000 18.34700 64.45100 37.62000 73.23900 solvation grid x, y, z dimensions: 71 72 87 finished receptor accessible surface finished initializing dielectric grid finished creating receptor molecular surface grid dV is 9.9471835E-03 Precalculating solvmap lookup table Starting solvmap calculation. 1 / 88 the way there! 2 / 88 the way there! 3 / 88 the way there! 4 / 88 the way there! 5 / 88 the way there! 6 / 88 the way there! 7 / 88 the way there! 8 / 88 the way there! 9 / 88 the way there! 10 / 88 the way there! 11 / 88 the way there! 12 / 88 the way there! 13 / 88 the way there! 14 / 88 the way there! 15 / 88 the way there! 16 / 88 the way there! 17 / 88 the way there! 18 / 88 the way there! 19 / 88 the way there! 20 / 88 the way there! 21 / 88 the way there! 22 / 88 the way there! 23 / 88 the way there! 24 / 88 the way there! 25 / 88 the way there! 26 / 88 the way there! 27 / 88 the way there! 28 / 88 the way there! 29 / 88 the way there! 30 / 88 the way there! 31 / 88 the way there! 32 / 88 the way there! 33 / 88 the way there! 34 / 88 the way there! 35 / 88 the way there! 36 / 88 the way there! 37 / 88 the way there! 38 / 88 the way there! 39 / 88 the way there! 40 / 88 the way there! 41 / 88 the way there! 42 / 88 the way there! 43 / 88 the way there! 44 / 88 the way there! 45 / 88 the way there! 46 / 88 the way there! 47 / 88 the way there! 48 / 88 the way there! 49 / 88 the way there! 50 / 88 the way there! 51 / 88 the way there! 52 / 88 the way there! 53 / 88 the way there! 54 / 88 the way there! 55 / 88 the way there! 56 / 88 the way there! 57 / 88 the way there! 58 / 88 the way there! 59 / 88 the way there! 60 / 88 the way there! 61 / 88 the way there! 62 / 88 the way there! 63 / 88 the way there! 64 / 88 the way there! 65 / 88 the way there! 66 / 88 the way there! 67 / 88 the way there! 68 / 88 the way there! 69 / 88 the way there! 70 / 88 the way there! 71 / 88 the way there! 72 / 88 the way there! 73 / 88 the way there! 74 / 88 the way there! 75 / 88 the way there! 76 / 88 the way there! 77 / 88 the way there! 78 / 88 the way there! 79 / 88 the way there! 80 / 88 the way there! 81 / 88 the way there! 82 / 88 the way there! 83 / 88 the way there! 84 / 88 the way there! 85 / 88 the way there! 86 / 88 the way there! 87 / 88 the way there! 88 / 88 the way there! successful completion elapsed time (sec): 1777.9700 Tue Oct 11 05:51:21 PDT 2011 rec.crg solvmap_sev 1.60,1.65,1.90,1.90,1.90,1.60 1.4 2 box 1.4 EOI # receptor file # output grid file # radii of oxygen, nitrogen, carbon, sulfur, phosphorus, and "other" atoms. # radius of probe # grid resolution # box file # born radius of ligand atom