usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 43.6673846153846 -3.12930769230769 27.8746153846154 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 483 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 337 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 335 Number of spheres polar: 139, nonpolar: 114, out of current total: 335 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.87099 52.85000 -13.02256 6.63417 18.92165 37.77100 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 131 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 103 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 79 Spheres center of coords (x y z): 43.7536081012658 -3.65574721518987 31.7228006329114 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.64629409094759 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 13