usefragsph not on
There are 13 ligand heavy atoms
Ligand center of coords (x y z): 45.8468461538462 20.5356153846154 52.5414615384615
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 546
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 366
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 366
Number of spheres polar: 126, nonpolar: 130, out of current total: 366
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 37.11959 55.52493 10.59371 29.92801 42.55881 62.46604
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 205
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 188
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 156
Spheres center of coords (x y z): 47.3078765384616 23.9569967948718 50.903425
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.73290850350427
Final number of output spheres is: 60
Number of polar spheres: 19
Number of nonpolar spheres: 24
Number of spheres that are near neither polar nor nonpolar receptor atoms: 17
Final number of spheres that are from crystallographic ligand: 13