usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 12.0926666666667 28.783 26.5352222222222
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 778
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 485
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 485
Number of spheres polar: 257, nonpolar: 159, out of current total: 485
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.23342 22.00883 18.87826 38.62975 17.20726 36.49400
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 167
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 127
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 101
Spheres center of coords (x y z): 10.986284950495 27.0115062376238 29.8933298019802
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.6858260807401
Final number of output spheres is: 45
Number of polar spheres: 25
Number of nonpolar spheres: 12
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 9