usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 10.4530285714286 -7.4196 24.2222 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1183 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 599 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 595 Number of spheres polar: 205, nonpolar: 232, out of current total: 595 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.47999 20.43712 -17.36705 2.57963 14.25518 34.15891 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 234 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 202 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 190 Spheres center of coords (x y z): 10.7791910526316 -7.08775847368421 22.5286778947368 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.67035698528188 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 35