usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 10.4530285714286 -7.4196 24.2222 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1183 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 599 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 595 Number of spheres polar: 205, nonpolar: 232, out of current total: 595 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.47999 20.43712 -17.36705 2.57963 14.25518 34.15891 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 353 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 303 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 281 Spheres center of coords (x y z): 10.9077856227758 -6.73732423487544 22.5182860142349 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.60696653590103 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 35