usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 11.8998235294118 -8.52132352941176 23.3180588235294 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1116 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 602 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 601 Number of spheres polar: 230, nonpolar: 215, out of current total: 601 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.12280 21.83832 -18.50384 1.07325 13.35526 33.22530 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 337 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 289 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 259 Spheres center of coords (x y z): 11.5161359459459 -7.90104528957529 22.091604015444 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.50765413938465 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 34