usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 42.8107058823529 -2.95429411764706 28.6616470588235 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 770 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 534 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 528 Number of spheres polar: 223, nonpolar: 197, out of current total: 528 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 32.87674 52.42101 -12.95281 7.01466 18.68113 38.58084 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 194 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 154 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 80 Spheres center of coords (x y z): 42.771873375 -4.4932685 30.0427055 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.06505822207894 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 17