usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 42.8107058823529 -2.95429411764706 28.6616470588235 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 770 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 534 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 528 Number of spheres polar: 223, nonpolar: 197, out of current total: 528 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 32.87674 52.42101 -12.95281 7.01466 18.68113 38.58084 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 274 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 242 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 127 Spheres center of coords (x y z): 42.9776488188977 -4.44003590551181 29.5932855905512 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.12914780378849 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 17