usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 43.0055882352941 -2.53417647058824 29.0555294117647 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 718 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 521 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 520 Number of spheres polar: 234, nonpolar: 209, out of current total: 520 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.06951 52.84669 -12.47257 7.45066 19.09417 39.01900 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 276 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 232 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 193 Spheres center of coords (x y z): 44.1721342487047 -3.0025678238342 32.123837253886 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.92662338009713 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 17