usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 45.1355263157895 22.0888421052632 50.5933157894737 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 695 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 459 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 457 Number of spheres polar: 116, nonpolar: 193, out of current total: 457 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 35.23304 54.99620 14.48830 31.99414 40.64807 60.49157 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 179 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 154 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 135 Spheres center of coords (x y z): 46.9037465185186 25.3373328148148 48.0866602962963 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.77901401204109 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 19