usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 43.9812631578947 -2.14842105263158 29.5403157894737 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 679 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 425 WARNING: removing a crystallographic sphere that is distance 1.19651577507361 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 419 Number of spheres polar: 131, nonpolar: 175, out of current total: 419 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.19768 53.94000 -12.11207 7.58233 19.66763 39.52790 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 169 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 139 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 121 Spheres center of coords (x y z): 44.5321147107438 -2.79744900826446 33.4965184297521 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.24202424255006 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 18