usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 43.4916666666667 -2.38642857142857 29.6693333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 720 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 421 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 417 Number of spheres polar: 122, nonpolar: 158, out of current total: 417 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.81247 53.48954 -12.23313 7.37542 19.88407 39.61732 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 256 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 227 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 205 Spheres center of coords (x y z): 44.6849040487805 -2.56405048780488 33.3735533658537 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.26553727057148 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 19 Final number of spheres that are from crystallographic ligand: 21