usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 43.6726842105263 -2.04978947368421 29.5876842105263 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 692 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 415 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 410 Number of spheres polar: 145, nonpolar: 163, out of current total: 410 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.72011 53.64824 -11.99555 7.82700 19.69841 39.58152 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 172 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 141 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 121 Spheres center of coords (x y z): 44.2819766115702 -2.47858694214876 33.5659615702479 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.1322962691549 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 19