usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 43.4224615384615 -1.26080769230769 30.1506923076923 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 763 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 474 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 467 Number of spheres polar: 144, nonpolar: 184, out of current total: 467 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.66951 53.37100 -11.24401 8.61057 23.02436 40.05228 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 286 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 256 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 232 Spheres center of coords (x y z): 44.239064612069 -1.72828599137931 33.8021440086207 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.95466545038711 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 26