usefragsph not on There are 6 ligand heavy atoms Ligand center of coords (x y z): 13.1028333333333 3.59816666666667 78.2608333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 767 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 444 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 433 Number of spheres polar: 231, nonpolar: 110, out of current total: 433 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.11399 22.97441 -6.13605 13.49196 68.39479 88.14051 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 158 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 128 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 105 Spheres center of coords (x y z): 11.0382715238095 4.68621219047619 82.1097799047619 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.64115495203622 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 6