usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): -0.272611111111111 19.2658611111111 17.7015555555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 901 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 529 WARNING: removing a crystallographic sphere that is distance 7.32528511390512 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 7.5588505078484 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 524 Number of spheres polar: 197, nonpolar: 188, out of current total: 524 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.17645 9.72323 9.26703 26.88988 7.72950 27.70146 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 303 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 248 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 219 Spheres center of coords (x y z): -0.529070410958904 19.3220852054794 18.3667859360731 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.02326716300467 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 34