usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): -2.35851351351351 4.40856756756757 23.7367027027027 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 983 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 573 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 559 Number of spheres polar: 212, nonpolar: 192, out of current total: 559 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.10565 7.52689 -5.57476 14.31125 13.75832 33.69716 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 328 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 290 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 238 Spheres center of coords (x y z): -2.30088088235294 2.52681525210084 22.2070545798319 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.56121036270713 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 37