usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): -2.5675 4.54811111111111 23.6504722222222 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1044 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 618 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 606 Number of spheres polar: 206, nonpolar: 218, out of current total: 606 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.54501 7.31139 -5.42751 14.49454 13.72402 33.63739 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 229 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 197 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 189 Spheres center of coords (x y z): -3.13536153439153 2.96348068783069 23.0620200529101 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.7197558346822 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 36