usefragsph not on
There are 31 ligand heavy atoms
Ligand center of coords (x y z): 42.7949032258065 23.4424838709677 53.4707096774194
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1091
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 549
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 545
Number of spheres polar: 209, nonpolar: 192, out of current total: 545
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 32.82644 52.73673 13.94644 33.06791 43.47209 63.31223
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 319
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 276
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 266
Spheres center of coords (x y z): 42.3660051503759 24.7498472180451 52.9543790601504
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.57568499921814
Final number of output spheres is: 60
Number of polar spheres: 34
Number of nonpolar spheres: 19
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 31