usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 23.5382424242424 3.35845454545454 28.9215454545455 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1319 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 574 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 570 Number of spheres polar: 245, nonpolar: 203, out of current total: 570 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.80562 33.50629 -6.63781 13.26331 18.97027 38.90807 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 324 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 284 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 222 Spheres center of coords (x y z): 21.9214716666667 2.97382963963964 30.8151628378378 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.75898995286984 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 33