usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): -0.21 17.1540416666667 18.337625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 973 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 483 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 481 Number of spheres polar: 196, nonpolar: 162, out of current total: 481 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.20568 9.71652 7.45454 26.60643 8.39260 28.31442 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 184 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 154 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 135 Spheres center of coords (x y z): -0.788349111111111 18.8239899259259 18.6710606666667 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.75513750186675 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 24