usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): -0.243041666666667 17.2225833333333 18.6277083333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 922 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 563 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 562 Number of spheres polar: 221, nonpolar: 204, out of current total: 562 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.23432 9.74317 7.27976 25.93160 8.70415 28.60298 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 200 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 176 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 151 Spheres center of coords (x y z): -1.00110450331126 19.1555844370861 19.7697915231788 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.49743053788359 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 24