usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): -2.82902941176471 5.8009705882353 24.9719117647059 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1156 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 673 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 666 Number of spheres polar: 261, nonpolar: 237, out of current total: 666 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.77927 7.15242 -4.10974 15.79955 14.99100 34.96442 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 241 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 203 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 164 Spheres center of coords (x y z): -2.94545987804878 3.3974275 22.9945518292683 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.43525664053554 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 34