usefragsph not on
There are 34 ligand heavy atoms
Ligand center of coords (x y z): 41.7331470588235 23.8297647058823 54.257794117647
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1149
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 534
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 524
Number of spheres polar: 160, nonpolar: 214, out of current total: 524
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 31.73602 51.71693 13.84018 32.35769 44.28930 64.14265
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 283
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 246
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 208
Spheres center of coords (x y z): 42.7173059134616 24.2396790384615 53.22228875
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.12639074993439
Final number of output spheres is: 60
Number of polar spheres: 14
Number of nonpolar spheres: 33
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 34