usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 26.3076666666667 10.1183333333333 15.0608181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1270 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 623 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 615 Number of spheres polar: 261, nonpolar: 210, out of current total: 615 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.36850 36.28400 3.93452 20.11186 5.34419 25.05571 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 230 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 163 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 132 Spheres center of coords (x y z): 27.4989217424242 9.84494143939394 16.1016528030303 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.52817288475394 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 33