usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): 28.7415 -13.320375 16.665 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 636 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 501 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 501 Number of spheres polar: 259, nonpolar: 135, out of current total: 501 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.38668 38.71487 -22.20882 -3.45099 6.89369 26.54119 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 165 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 127 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 109 Spheres center of coords (x y z): 29.4813311009174 -17.3412513761468 18.7093219266055 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.38840669960942 Final number of output spheres is: 45 Number of polar spheres: 23 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 8