usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 43.8228 -1.37848 30.76056 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 714 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 430 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 423 Number of spheres polar: 125, nonpolar: 172, out of current total: 423 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.82589 53.79140 -11.28876 8.51016 22.99933 40.74541 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 191 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 164 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 145 Spheres center of coords (x y z): 44.4364048965517 -1.95637420689655 34.2694576551724 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.8760553236603 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 25