usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 43.8228 -1.37848 30.76056 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 714 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 430 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 423 Number of spheres polar: 125, nonpolar: 172, out of current total: 423 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.82589 53.79140 -11.28876 8.51016 22.99933 40.74541 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 278 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 249 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 222 Spheres center of coords (x y z): 45.034477027027 -2.17489076576577 34.0500572972973 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.90563176538926 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 25